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Table 3 Major altered pathways

From: Proteomics research on muscle-invasive bladder transitional cell carcinoma

Pathway SWISS-PROT name
Spliceosome ACIN1, BCAS2, CRNKL1, EIF4A3, HNRNPA1, HNRNPA3, HNRNPM, HSPA2, LSM3, PRPF8, PUF60, SF3B1, SFRS13A, SFRS3, SFRS6, SFRS9, SNRPB, SNRPD2, SNRPD3, SNRPF, SNRPG, TRA2A, TRA2B
Huntington's disease ATP5D, ATP5O, CLTA, CLTC, CLTCL1, COX2, COX5B, CYC1, CYCS, DLG4, DNAH2, EP300, NDUFA3, NDUFA5, NDUFS6, PLCB1, POLR2D, RCOR1, SLC25A5, SOD1, SOD2, UQCRB, UQCRC1, UQCRC2, VDAC2
Alzheimer's disease ADAM10, ATP2A2, ATP2A3, ATP5D, ATP5O, CAPN2, COX2, COX5B, CYC1, CYCS, GRIN2C, HSD17B10, LRP1, NDUFA3, NDUFA5, NDUFS6, PLCB1, PPP3R1, TNF, UQCRB, UQCRC1, UQCRC2
Endocytosis ARAP3, CLTA, CLTC, CLTCL1, EGFR, EHD1, EPN1, FAM125B, FLT1, HLA-A, HLA-B, HLA-C, HSPA2, MET, PDCD6IP, RAB11B, RAB11FIP3, RAB5C, VTA1
Focal adhesion CAPN2, CAV1, COL4A2, CRK, DOCK1, EGFR, FLT1, FYN, ILK, ITGA5, ITGB1, MET, PIK3R3, PPP1CC, PPP1R12A, PRKCG, RAC2, THBS1, TLN2, TNXB
Oxidative phosphorylation ATP5D, ATP5I, ATP5J2, ATP5O, COX2, COX5B, CYC1, NDUFA3, NDUFA5, NDUFS6, PPA2, TCIRG1, UQCRB, UQCRC1, UQCRC2
Parkinson's disease ATP5D, ATP5O, COX2, COX5B, CYC1, CYCS, NDUFA3, NDUFA5, NDUFS6, SLC25A5, UQCRB, UQCRC1, UQCRC2, VDAC2
Ribosome RPL10A, RPL21, RPL22, RPL31, RPL3, RPL5, RPL9, RPLP1, RPS12, RPS16, RPS19, RPS20, RPS5, RPS6, RPS7, RPS8
Glycolysis/Gluconeogenesis ADH1A, ADH1B, AKR1A1, ALDH1B1, ALDH2, ALDOC, DLD, ENO2, GPI, PGAM2, PGM1, PKM2, TPI1
Viral myocarditis ABL2, CAV1, CYCS, DAG1, FYN, HLA-A, HLA-B, HLA-C, HLA-DRA, HLA-DRB1, MYH15, RAC2
Antigen processing and presentation CD74, CTSB, CTSS, HLA-A, HLA-B, HLA-C, HLA-DRA, HLA-DRB1, HSPA2, IFI30, PSME2
Cardiac muscle contraction ATP1B3, ATP2A2, COX2, COX5B, CYC1, TPM2, TPM3, UQCRB, UQCRC1, UQCRC2