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Table 2 Sequence analysis of PDGFRα exons 12 and 18 from eight primary cervical cancer cell lines.

From: Expression of platelet derived growth factor family members and the potential role of imatinib mesylate for cervical cancer

CELL LINE

EXON 12

EXON 18

 

localization

change

position

amino acid

localization

change

position

amino acid

ViBo

Exon

G>A CCA >CCG

Codon 567

Pro > Pro

Intron

C >G

IVS18 +21

---

Exon

G>A CCA >CCG

Codon 577

Pro > Pro

Intron

A >G

IVS18 +25

---

Exon

A>G TCA >TCG

Codon 584

Ser > Ser

-----

Intron

A> G

IVS12 +17

----

-----

Intron

T> C

IVS12 +35

----

-----

ViPa

WT

Exon

C >T GTC>GTT

Codon 824

Val > Val

HeLa

WT

Exon

C >T GTC>GTT

Codon 824

Val > Val

CaLo

WT

Exon

C >T GTC>GTT

Codon 824

Val > Val

INBL

WT

Exon

C >T GTC>GTT

Codon 824

Val > Val

C33

Exon

G >A GAA>AAA

Codon 571

Glu > Lys

WT

Caski

Exon

G >A GAA>AAA

Codon 571

Glu > Lys

WT

SiHa

Exon

G >A GAA>AAA

Codon 571

Glu > Lys

WT

  1. WT: wild type; IVS: intronic variation sequence. We found 7 intronic and 5 exonic variations sequences [RefSeq accession D50017]. None of the intronic variations have been reported: for exon 12 we found, A >G IVS12+17 and T >C IVS12+35, and for exon 18, C >G IVS18+21 and A >G IVS18+25. The exonic changes were: G >A in codon 567 CCA >CCG, Pro>Pro [rs1873778] synonimous; G>A codon 577 CCA >CCG, Pro >Pro (unknown) synonimous; C >T in codon 824 GTC >GTT, Val >Val [rs10015469] synonimous; G >A codon 571 CCA >CCG, Glu > Lys (unknown) not deleterious; and A >G in codon 584 CCA >CCG, Ser > Ser (unknown) synonimous.