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Table 4 Gene sets enriched in decreased expression phenotype

From: Expression of the Wnt ligands gene family and its relationship to prognosis in hepatocellular carcinoma

MSigDB collection

Gene

Gene set name

NES

NOM p-val

FDR q-val

c2.cp.kegg.v6.1.entrez.gmt

Wnt1

KEGG_NUCLEOTIDE_EXCISION_REPAIR

− 1.88

0.002

0.225

 

Wnt5B

KEGG_AMINOACYL_TRNA_BIOSYNTHESIS

− 2.23

0.000

0.000

  

KEGG_BASAL_TRANSCRIPTION_FACTORS

− 1.74

0.009

0.248

  1. NES normalized enrichment score, NOM nominal, FDR false discovery rate. Gene sets with NOM p-val b0.05 and FDR q-val b0.25 are considered as significant
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Cancer Cell International

ISSN: 1475-2867

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