Accession | BRCA | Control | t | df | P-value | TP | FP | FN | TN | GEO Series (Countries) | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N1 | M1 | SD1 | N2 | M2 | SD2 | |||||||||
GPL1390 | 171 | 0.037 | 0.417 | 13 | −0.168 | 0.439 | −1.700 | 182 | 0.091 | 154 | 8 | 17 | 5 | GSE10885; GSE10886; GSE10893; GSE1992; GSE2607; GSE6128(USA) |
GPL13607 | 245 | 11.004 | 1.435 | 148 | 10.941 | 1.163 | -0.478 | 358.939 | 0.633 | 56 | 15 | 189 | 133 | GSE59246; GSE70951(USA) |
GPL14550 | 48 | 2.483 | 1.162 | 24 | 1.302 | 1.095 | −4.144 | 70 | 0 | 33 | 7 | 15 | 17 | GSE33447(China); GSE83591(Canada) |
GPL17586 | 214 | 2.727 | 0.332 | 57 | 2.540 | 0.300 | −3.849 | 269 | 0 | 144 | 23 | 70 | 34 | GSE115144(China); GSE73540(Malaysia); GSE76250(China) |
GPL5175 | 45 | 4.133 | 0.573 | 28 | 4.224 | 0.463 | 0.707 | 71 | 0.482 | 20 | 5 | 25 | 23 | GSE109169(China); GSE33692(USA) |
GPL96 | 231 | 6.378 | 0.779 | 62 | 6.407 | 0.778 | 0.264 | 291 | 0.792 | 181 | 41 | 50 | 21 | GSE15852(Malaysia); GSE5364(Singapore); GSE6883(USA) |
GPL570 | 1611 | 5.576 | 0.813 | 361 | 4.823 | 0.764 | −16.071 | 1970 | 0 | 1059 | 97 | 552 | 264 | GSE20711(Canada); GSE45827(France); GSE65194(France); GSE29431(Spain); GSE7904(USA); GSE31448(France); GSE29044(Saudi Arabia); GSE50567(Poland); GSE61304(Singapore); GSE42568(Ireland); GSE5764(Czech Republic); GSE10780(USA); GSE10810(Spain); GSE21422(Germany); GSE22544(USA); GSE25407(USA); GSE26910(Italy); GSE54002(Singapore); GSE71053(Denmark) |
GPL887 | 304 | 0.023 | 0.505 | 34 | −0.081 | 0.585 | −1.120 | 336 | 0.263 | 279 | 25 | 25 | 9 | GSE10885(USA); GSE2607(USA); GSE24124 (China); GSE9309(China) |
GPL6244 | 294 | 6.068 | 0.806 | 91 | 5.467 | 0.629 | −7.426 | 189.554 | 0 | 219 | 32 | 75 | 59 | GSE36295(Saudi Arabia); GSE86374(Mexico); GSE61724(Australia); GSE37751(USA) |
GPL8269 | 226 | 2.243 | 0.857 | 41 | 1.434 | 0.676 | −5.724 | 265 | 0 | 167 | 12 | 59 | 29 | GSE22384-GPL8269(USA); GSE41119(USA) |
GPL8264 | 12 | 1.339 | 1.613 | 9 | 0.303 | 1.185 | −1.622 | 19 | 0.121 | 7 | 1 | 5 | 8 | GSE22384-GPL8264(USA) |
GPL8274 | 26 | 1.907 | 1.216 | 20 | 0.809 | 1.234 | −3.017 | 44 | 0.004 | 21 | 5 | 5 | 15 | GSE22384-GPL8274(USA) |
GPL6848 | 19 | 1.400 | 1.125 | 6 | −1.471 | 1.058 | −5.521 | 23 | 0 | 19 | 1 | 0 | 5 | GSE26304(Canada) |
GPL6480 | 225 | 3.945 | 1.184 | 42 | 2.369 | 0.980 | −8.124 | 265 | 0 | 195 | 8 | 30 | 34 | GSE22820(Canada); GSE45581(USA); GSE72644(Canada) |
TCGA-GTEx | 1104 | 3.363 | 1.193 | 193 | 1.994 | 1.059 | −14.936 | 1295 | 0 | 866 | 54 | 238 | 139 | / |
GSE103512 | 65 | 4.247 | 0.570 | 10 | 3.633 | 0.454 | −3.244 | 73 | 0.002 | 50 | 1 | 15 | 9 | GSE103512 (USA) |
GSE10797 | 28 | 2.341 | 0.295 | 5 | 2.163 | 0.124 | −1.310 | 31 | 0.2 | 23 | 1 | 5 | 4 | GSE10797 (USA) |
GSE92252 | 6 | 11.196 | 2.076 | 3 | 8.337 | 0.263 | −3.321 | 5.312 | 0.019 | 6 | 0 | 0 | 3 | GSE92252 (China) |
GSE29174 | 148 | −0.356 | 0.984 | 9 | −2.102 | 0.701 | −5.234 | 155 | 0 | 129 | 1 | 19 | 8 | GSE29174 (USA) |
GSE50428 | 26 | 8.519 | 0.809 | 5 | 7.706 | 0.535 | −2.143 | 29 | 0.041 | 21 | 1 | 5 | 4 | GSE50428 (Germany) |
Total numbers | 5048 | Â | Â | 1161 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |