Skip to main content

Table 1 Basic information of the enrolled data sets

From: Clinical value and potential mechanisms of COL8A1 upregulation in breast cancer: a comprehensive analysis

Accession BRCA Control t df P-value TP FP FN TN GEO Series (Countries)
N1 M1 SD1 N2 M2 SD2
GPL1390 171 0.037 0.417 13 −0.168 0.439 −1.700 182 0.091 154 8 17 5 GSE10885; GSE10886; GSE10893; GSE1992; GSE2607; GSE6128(USA)
GPL13607 245 11.004 1.435 148 10.941 1.163 -0.478 358.939 0.633 56 15 189 133 GSE59246; GSE70951(USA)
GPL14550 48 2.483 1.162 24 1.302 1.095 −4.144 70 0 33 7 15 17 GSE33447(China); GSE83591(Canada)
GPL17586 214 2.727 0.332 57 2.540 0.300 −3.849 269 0 144 23 70 34 GSE115144(China); GSE73540(Malaysia); GSE76250(China)
GPL5175 45 4.133 0.573 28 4.224 0.463 0.707 71 0.482 20 5 25 23 GSE109169(China); GSE33692(USA)
GPL96 231 6.378 0.779 62 6.407 0.778 0.264 291 0.792 181 41 50 21 GSE15852(Malaysia); GSE5364(Singapore); GSE6883(USA)
GPL570 1611 5.576 0.813 361 4.823 0.764 −16.071 1970 0 1059 97 552 264 GSE20711(Canada); GSE45827(France); GSE65194(France); GSE29431(Spain); GSE7904(USA); GSE31448(France); GSE29044(Saudi Arabia); GSE50567(Poland); GSE61304(Singapore); GSE42568(Ireland); GSE5764(Czech Republic); GSE10780(USA); GSE10810(Spain); GSE21422(Germany); GSE22544(USA); GSE25407(USA); GSE26910(Italy); GSE54002(Singapore); GSE71053(Denmark)
GPL887 304 0.023 0.505 34 −0.081 0.585 −1.120 336 0.263 279 25 25 9 GSE10885(USA); GSE2607(USA); GSE24124 (China); GSE9309(China)
GPL6244 294 6.068 0.806 91 5.467 0.629 −7.426 189.554 0 219 32 75 59 GSE36295(Saudi Arabia); GSE86374(Mexico); GSE61724(Australia); GSE37751(USA)
GPL8269 226 2.243 0.857 41 1.434 0.676 −5.724 265 0 167 12 59 29 GSE22384-GPL8269(USA); GSE41119(USA)
GPL8264 12 1.339 1.613 9 0.303 1.185 −1.622 19 0.121 7 1 5 8 GSE22384-GPL8264(USA)
GPL8274 26 1.907 1.216 20 0.809 1.234 −3.017 44 0.004 21 5 5 15 GSE22384-GPL8274(USA)
GPL6848 19 1.400 1.125 6 −1.471 1.058 −5.521 23 0 19 1 0 5 GSE26304(Canada)
GPL6480 225 3.945 1.184 42 2.369 0.980 −8.124 265 0 195 8 30 34 GSE22820(Canada); GSE45581(USA); GSE72644(Canada)
TCGA-GTEx 1104 3.363 1.193 193 1.994 1.059 −14.936 1295 0 866 54 238 139 /
GSE103512 65 4.247 0.570 10 3.633 0.454 −3.244 73 0.002 50 1 15 9 GSE103512 (USA)
GSE10797 28 2.341 0.295 5 2.163 0.124 −1.310 31 0.2 23 1 5 4 GSE10797 (USA)
GSE92252 6 11.196 2.076 3 8.337 0.263 −3.321 5.312 0.019 6 0 0 3 GSE92252 (China)
GSE29174 148 −0.356 0.984 9 −2.102 0.701 −5.234 155 0 129 1 19 8 GSE29174 (USA)
GSE50428 26 8.519 0.809 5 7.706 0.535 −2.143 29 0.041 21 1 5 4 GSE50428 (Germany)
Total numbers 5048    1161