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Table 1 Basic information of the enrolled data sets

From: Clinical value and potential mechanisms of COL8A1 upregulation in breast cancer: a comprehensive analysis

Accession

BRCA

Control

t

df

P-value

TP

FP

FN

TN

GEO Series (Countries)

N1

M1

SD1

N2

M2

SD2

GPL1390

171

0.037

0.417

13

−0.168

0.439

−1.700

182

0.091

154

8

17

5

GSE10885; GSE10886; GSE10893; GSE1992; GSE2607; GSE6128(USA)

GPL13607

245

11.004

1.435

148

10.941

1.163

-0.478

358.939

0.633

56

15

189

133

GSE59246; GSE70951(USA)

GPL14550

48

2.483

1.162

24

1.302

1.095

−4.144

70

0

33

7

15

17

GSE33447(China); GSE83591(Canada)

GPL17586

214

2.727

0.332

57

2.540

0.300

−3.849

269

0

144

23

70

34

GSE115144(China); GSE73540(Malaysia); GSE76250(China)

GPL5175

45

4.133

0.573

28

4.224

0.463

0.707

71

0.482

20

5

25

23

GSE109169(China); GSE33692(USA)

GPL96

231

6.378

0.779

62

6.407

0.778

0.264

291

0.792

181

41

50

21

GSE15852(Malaysia); GSE5364(Singapore); GSE6883(USA)

GPL570

1611

5.576

0.813

361

4.823

0.764

−16.071

1970

0

1059

97

552

264

GSE20711(Canada); GSE45827(France); GSE65194(France); GSE29431(Spain); GSE7904(USA); GSE31448(France); GSE29044(Saudi Arabia); GSE50567(Poland); GSE61304(Singapore); GSE42568(Ireland); GSE5764(Czech Republic); GSE10780(USA); GSE10810(Spain); GSE21422(Germany); GSE22544(USA); GSE25407(USA); GSE26910(Italy); GSE54002(Singapore); GSE71053(Denmark)

GPL887

304

0.023

0.505

34

−0.081

0.585

−1.120

336

0.263

279

25

25

9

GSE10885(USA); GSE2607(USA); GSE24124 (China); GSE9309(China)

GPL6244

294

6.068

0.806

91

5.467

0.629

−7.426

189.554

0

219

32

75

59

GSE36295(Saudi Arabia); GSE86374(Mexico); GSE61724(Australia); GSE37751(USA)

GPL8269

226

2.243

0.857

41

1.434

0.676

−5.724

265

0

167

12

59

29

GSE22384-GPL8269(USA); GSE41119(USA)

GPL8264

12

1.339

1.613

9

0.303

1.185

−1.622

19

0.121

7

1

5

8

GSE22384-GPL8264(USA)

GPL8274

26

1.907

1.216

20

0.809

1.234

−3.017

44

0.004

21

5

5

15

GSE22384-GPL8274(USA)

GPL6848

19

1.400

1.125

6

−1.471

1.058

−5.521

23

0

19

1

0

5

GSE26304(Canada)

GPL6480

225

3.945

1.184

42

2.369

0.980

−8.124

265

0

195

8

30

34

GSE22820(Canada); GSE45581(USA); GSE72644(Canada)

TCGA-GTEx

1104

3.363

1.193

193

1.994

1.059

−14.936

1295

0

866

54

238

139

/

GSE103512

65

4.247

0.570

10

3.633

0.454

−3.244

73

0.002

50

1

15

9

GSE103512 (USA)

GSE10797

28

2.341

0.295

5

2.163

0.124

−1.310

31

0.2

23

1

5

4

GSE10797 (USA)

GSE92252

6

11.196

2.076

3

8.337

0.263

−3.321

5.312

0.019

6

0

0

3

GSE92252 (China)

GSE29174

148

−0.356

0.984

9

−2.102

0.701

−5.234

155

0

129

1

19

8

GSE29174 (USA)

GSE50428

26

8.519

0.809

5

7.706

0.535

−2.143

29

0.041

21

1

5

4

GSE50428 (Germany)

Total numbers

5048

  

1161

         Â