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Table 2 Non-reference LINE-1 insertions in six colorectal advanced adenomas and one adjacent tissue

From: Promoter methylation, transcription, and retrotransposition of LINE-1 in colorectal adenomas and adenocarcinomas

NCBI-ID Gene name Gene full name Region of insertion Insertion family Type Size of Insertion (bp) Sample Count
NR_028067 OR4N3P olfactory receptor family 4 subfamily N member 3 pseudogene PROMOTER L1Ambig 4170 5
NM_001005469 OR5B3 olfactory receptor family 5 subfamily B member 3 PROMOTER L1Ta 1471 1
NM_001033054 AIPL1 aryl hydrocarbon receptor interacting protein like 1 PROMOTER L1Ambig 64 1
NM_001270974 HYDIN HYDIN, Axonemal Central Pair Apparatus Protein INTRONIC L1Ta1d *5984–6019 6
NM_000369 TSHR Thyroid Stimulating Hormone Receptor INTRONIC L1Ta1d *6017 1
NM_001099771 POTEF POTE Ankyrin Domain Family Member F INTRONIC L1Ta1d *5986–6010 3
NR_027413 LINC00910 Long Intergenic Non-Protein Coding RNA 910 INTRONIC L1Ambig 3756 1
NM_145235 FANK1 Fibronectin Type III And Ankyrin Repeat Domains 1 INTRONIC L1Ambig 2910–2919 7
NM_052900 CSMD3 CUB and Sushi Multiple Domains 3 INTRONIC L1Ambig 1705 1
NR_002833 DPY19L2P1 DPY19L2 Pseudogene 1 INTRONIC L1Ambig 83–1683 4
NM_000947 PRIM2 Primase DNA Subunit 2 INTRONIC L1Ambig 1525 1
NR_135597.1 LOC101928195 INTRONIC L1Ambig 1386 1
NM_001994 F13B Coagulation Factor XIII B Chain INTRONIC L1Ta 604 1
NM_022062 PKNOX2 PBX/Knotted 1 Homeobox 2 INTRONIC L1Ambig 547 1
NM_001025231 KPRP Keratinocyte Proline Rich Protein INTRONIC L1Ta 218 1
NM_001164315.1 ANKRD36 Ankyrin Repeat Domain 36 INTRONIC L1Ambig 179 1
NM_001131010 SATB1 SATB Homeobox 1 INTRONIC L1Ambig 159 1
NM_017812 CHCHD3 Coiled-Coil-Helix-Coiled-Coil-Helix Domain Containing 3 INTRONIC L1Ambig 147 1
NM_001037175 SUSD4 Sushi Domain Containing 4 INTRONIC L1Ambig 59 1
NM_033225 CSMD1 CUB And Sushi Multiple Domains 1 INTRONIC L1Ambig 49 1
  1. * Full-length insertion event