From: The emerging roles of non-coding competing endogenous RNA in hepatocellular carcinoma
Databases | Brief description | Link | Ref |
---|---|---|---|
starBase v2.0 | Database supplies comprehensive interaction network of ncRNAs (lncRNAs, miRNAs, and ceRNAs), mRNA, and proteins in cancer cells and normal tissues based on 108 CLIP-Seq | [31] | |
NPInter v3.0 | Database supplies comprehensive interaction among ncRNAs (except tRNAs and rRNAs), lncRNAs and others. It provides different types of basic information about the interaction | [32] | |
DIANA-LncBase v2 | Database supplies two different miRNA–lncRNA interaction modules. One module is experimentally supported, and the other is in silico predicted interactions | ||
circBase | Database provides scripts to identify known and novel circRNAs in sequencing data. | [35] | |
LNCediting | Database supplies information about RNA editing in lncRNAs and miRNA–lncRNA interactions | [36] | |
CircInteractome | Database supplies information about circRNAs and their interaction with proteins or miRNAs | [37] | |
Cancer-Specific-CirRNA-Database (CSCD) | Database for cancer-specific circRNAs | [38] | |
spongeScan | Database supplies information about microRNA binding elements in lncRNA sequences | [39] | |
SomamiR 2.0 | Database provides information and functional analysis of expected miRNA–ceRNA interaction | [40] | |
lnCeDB | Database provides information of human lncRNA that acts as ceRNAs | [41] | |
miRBase | Database provides miRNA gene hunters with unique names for novel miRNA genes prior to publication of results | [42] | |
Targetscan | Database provides information of predicted microRNA targets | [43] | |
miRcode | Database provides “whole transcriptome” human microRNA target predictions based on the comprehensive GENCODE gene annotation. | [44] |