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Table 2 31-CpG-sites details in the epigenetic signature

From: Epigenetic signature predicts overall survival clear cell renal cell carcinoma

CpG ID

Gene symbol

CHR

Strand

Type

Feature

Delta β

Lasso coef

cg00936626

PIGZ

3

F

II

5′UTR

− 0.20

0.96

cg01569664

IRS2

13

R

I

Body

− 0.20

0.2

cg03429569

 

2

R

II

IGR

− 0.22

− 0.31

cg03615683

 

12

R

II

IGR

− 0.21

0.62

cg04025970

MFHAS1

8

R

II

Body

− 0.23

0.12

cg04074945

PHF21A

11

F

II

Body

− 0.26

− 0.06

cg07522913

HOXA3

7

F

I

5′UTR

− 0.27

− 0.25

cg07915516

AXIN1

16

R

II

Body

0.22

0.67

cg08699206

 

4

R

I

IGR

− 0.34

0.93

cg08949329

COL4A2

13

R

II

Body

− 0.22

0.6

cg09507567

 

10

R

II

IGR

0.24

0.06

cg09744051

A4GALT

22

F

II

5′UTR

0.25

0.59

cg10057940

 

10

F

II

IGR

− 0.24

0.57

cg10621809

 

12

R

II

IGR

− 0.24

0.47

cg12304520

PCDHGA4

5

R

II

Body

− 0.22

0.7

cg12864389

PLEC1

8

F

II

Body

0.37

− 1.15

cg14476745

LHX6

9

R

I

Body

− 0.31

0.1

cg15022051

 

6

R

I

IGR

− 0.25

0.48

cg15518113

CD247

1

R

II

3′UTR

− 0.22

1.09

cg16059943

PRKCZ

1

F

II

Body

− 0.23

− 1.38

cg16342949

MACROD1

11

F

I

Body

− 0.24

0.38

cg16723800

TAF7L

X

F

I

Body

− 0.31

0.04

cg17482089

PCDHA6

5

R

I

Body

− 0.24

0.73

cg18954144

 

2

R

I

IGR

− 0.30

0.43

cg19476788

NFATC1

18

R

I

Body

− 0.26

0.08

cg19528338

BMP2

20

R

II

5′UTR

0.21

0.6

cg21033440

SIPA1

11

F

I

Body

− 0.26

0.65

cg21157873

CGN

1

R

II

5′UTR

− 0.26

0.03

cg24997744

BAHCC1

17

R

I

3′UTR

− 0.22

− 1.27

cg25541653

MPPED2

11

R

II

Body

− 0.25

− 1.29

cg25755851

 

1

F

II

IGR

0.41

− 0.13