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Table 2 Databases of circRNAs

From: Cancer-related circular RNA: diverse biological functions

Database

Websites

The date of launching

Function

circRNABase

http://starbase.sysu.edu.cn/starbase2/mirCircRNA.php

2013

Constructing interaction networks of miRNA and circRNA and circRNA and RBPs

Circ2Traits

http://gyanxet-beta.com/circdb/

2013

The first database to collect circRNAs potentially associated with human disease or traits

circBase

http://www.circbase.org/

2014

Information such as genome location, cell line or tissue source and references can be provided and downloaded for a specific circRNA

CIRCpedia

http://www.picb.ac.cn/rnomics/circpedia/

2016

Providing annotations of alternative splicing and back splicing events for circRNAs from different cell lines or tissues

deepBase v2.0

http://deepbase.sysu.edu.cn/

2016

A platform for analyzing and predicting the evolution, expression patterns and functions of ncRNA in 19 different species

CircInteractome

https://circinteractome.nia.nih.gov/

2016

Predicting potential binding sites for RBPs and circRNA, miRNAs and circRNA, designing primers and siRNA for circRNAs

CircNet

http://circnet.mbc.nctu.edu.tw/

2016

The first public information platform that provides tissue-specific circRNA expression and circRNA-miRNA-mRNA regulatory networks

CircRNADb

http://202.195.183.4:8000/circrnadb/circRNADb.php

2016

The first circRNA database with the ability to encode proteins, providing information on the translational potential of circRNA and its related proteins

TSCD

http://gb.whu.edu.cn/TSCD/

2017

Searching for tissue-specific circRNA information in humans and mouse and predicting bound miRNAs

exoRBase

http://www.exorbase.org/

2017

Containing mRNA, lncRNA and circRNA, from serum exosomal RNA-seq sequencing samples

CSCD

http://gb.whu.edu.cn/CSCD/

2018

Provides many tumor-specific circRNAs, predicting MRE, RBP binding sites, ORF, and analyzing alternative splicing of related genes

circlncRNAnet

http://app.cgu.edu.tw/circlnc/

2018

An online analysis database that integrates the functional network of lncRNA and circRNA, supporting online visual analysis

circRNA disease

http://cgga.org.cn:9091/circRNADisease/

2018

Collecting human disease-related circRNAs and searching by circRNA name or disease name is supported

CircR2Disease

http://bioinfo.snnu.edu.cn/CircR2Disease/

2018

Revealing the relationship between circRNA and disease, and building an interaction network of circRNA and diseases