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Table 2 Databases of circRNAs

From: Cancer-related circular RNA: diverse biological functions

Database Websites The date of launching Function
circRNABase http://starbase.sysu.edu.cn/starbase2/mirCircRNA.php 2013 Constructing interaction networks of miRNA and circRNA and circRNA and RBPs
Circ2Traits http://gyanxet-beta.com/circdb/ 2013 The first database to collect circRNAs potentially associated with human disease or traits
circBase http://www.circbase.org/ 2014 Information such as genome location, cell line or tissue source and references can be provided and downloaded for a specific circRNA
CIRCpedia http://www.picb.ac.cn/rnomics/circpedia/ 2016 Providing annotations of alternative splicing and back splicing events for circRNAs from different cell lines or tissues
deepBase v2.0 http://deepbase.sysu.edu.cn/ 2016 A platform for analyzing and predicting the evolution, expression patterns and functions of ncRNA in 19 different species
CircInteractome https://circinteractome.nia.nih.gov/ 2016 Predicting potential binding sites for RBPs and circRNA, miRNAs and circRNA, designing primers and siRNA for circRNAs
CircNet http://circnet.mbc.nctu.edu.tw/ 2016 The first public information platform that provides tissue-specific circRNA expression and circRNA-miRNA-mRNA regulatory networks
CircRNADb http://202.195.183.4:8000/circrnadb/circRNADb.php 2016 The first circRNA database with the ability to encode proteins, providing information on the translational potential of circRNA and its related proteins
TSCD http://gb.whu.edu.cn/TSCD/ 2017 Searching for tissue-specific circRNA information in humans and mouse and predicting bound miRNAs
exoRBase http://www.exorbase.org/ 2017 Containing mRNA, lncRNA and circRNA, from serum exosomal RNA-seq sequencing samples
CSCD http://gb.whu.edu.cn/CSCD/ 2018 Provides many tumor-specific circRNAs, predicting MRE, RBP binding sites, ORF, and analyzing alternative splicing of related genes
circlncRNAnet http://app.cgu.edu.tw/circlnc/ 2018 An online analysis database that integrates the functional network of lncRNA and circRNA, supporting online visual analysis
circRNA disease http://cgga.org.cn:9091/circRNADisease/ 2018 Collecting human disease-related circRNAs and searching by circRNA name or disease name is supported
CircR2Disease http://bioinfo.snnu.edu.cn/CircR2Disease/ 2018 Revealing the relationship between circRNA and disease, and building an interaction network of circRNA and diseases