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Table 3 Gene set enrichment analysis of upregulated and downregulated gene sets in the cetuximab resistant group

From: Identification of key genes involved in tumor immune cell infiltration and cetuximab resistance in colorectal cancer

Name

Size

Es

Nes

Non p value

FDR q value

FWER p value

Up-regulation in Resistant Group

Ā Ā Ā Ā 

Ā HALLMARK_PEROXISOME

19

āˆ’0.36

āˆ’1.32

0.00

0.49

0.39

Ā HALLMARK_UV_RESPONSE_UP

24

āˆ’0.17

āˆ’1.00

0.38

1.00

1.00

Ā HALLMARK_MYOGENESIS

38

āˆ’0.48

āˆ’0.93

0.79

1.00

1.00

Ā HALLMARK_KRAS_SIGNALING_DN

27

āˆ’0.24

āˆ’0.92

0.54

1.00

1.00

Ā HALLMARK_ADIPOGENESIS

24

āˆ’0.17

āˆ’0.80

0.51

1.00

1.00

Ā Ā HALLMARK_INTERFERON_GAMMA_RESPONSE

31

āˆ’0.21

āˆ’0.77

0.91

1.00

1.00

Ā HALLMARK_INTERFERON_ALPHA_RESPONSE

24

āˆ’0.28

āˆ’0.76

0.91

0.98

1.00

Ā HALLMARK_P53_PATHWAY

24

āˆ’0.14

āˆ’0.68

0.91

0.92

1.00

Down-regulation in Resistant Group

Ā Ā Ā Ā 

Ā HALLMARK_COMPLEMENT

30

0.34

1.59

0.00

0.27

0.09

Ā HALLMARK_BILE_ACID_METABOLISM

21

0.38

1.57

0.00

0.19

0.19

Ā HALLMARK_IL2_STAT5_SIGNALING

31

0.38

1.50

0.00

0.16

0.25

Ā HALLMARK_UV_RESPONSE_DN

24

0.42

1.47

0.00

0.13

0.25

Ā HALLMARK_ESTROGEN_RESPONSE_EARLY

39

0.30

1.43

0.00

0.12

0.25

Ā HALLMARK_HYPOXIA

38

0.30

1.41

0.09

0.10

0.25

HALLMARK_APOPTOSIS

30

0.28

1.35

0.00

0.19

0.43

Ā HALLMARK_INFLAMMATORY_RESPONSE

29

0.44

1.29

0.00

0.25

0.56

Ā HALLMARK_GLYCOLYSIS

16

0.39

1.22

0.32

0.34

0.56

Ā HALLMARK_ESTROGEN_RESPONSE_LATE

34

0.40

1.21

0.00

0.31

0.56

Ā HALLMARK_XENOBIOTIC_METABOLISM

30

0.25

1.20

0.09

0.31

0.62

Ā HALLMARK_KRAS_SIGNALING_UP

41

0.48

1.13

0.32

0.48

0.67

Ā HALLMARK_TNFA_SIGNALING_VIA_NFKB

30

0.32

1.13

0.34

0.45

0.67

Ā HALLMARK_HEME_METABOLISM

21

0.29

1.08

0.29

0.59

0.95

Ā HALLMARK_APICAL_JUNCTION

26

0.28

0.99

0.44

0.88

1.00

Ā HALLMARK_COAGULATION

30

0.26

0.99

0.45

0.85

1.00

Ā HALLMARK_G2M_CHECKPOINT

19

0.40

0.98

0.54

0.82

1.00

Ā HALLMARK_E2F_TARGETS

21

0.37

0.97

0.69

0.79

1.00

Ā HALLMARK_MITOTIC_SPINDLE

15

0.29

0.95

0.66

0.80

1.00

Ā HALLMARK_MYC_TARGETS_V1

21

0.37

0.93

0.79

0.80

1.00

Ā HALLMARK_OXIDATIVE_PHOSPHORYLATION

17

0.32

0.91

0.82

0.83

1.00

Ā HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION

44

0.29

0.91

0.59

0.80

1.00

Ā HALLMARK_IL6_JAK_STAT3_SIGNALING

16

0.27

0.87

0.53

0.84

1.00

Ā HALLMARK_ALLOGRAFT_REJECTION

22

0.23

0.81

0.75

0.89

1.00

Ā HALLMARK_MTORC1_SIGNALING

19

0.19

0.67

0.91

0.96

1.00

Ā HALLMARK_FATTY_ACID_METABOLISM

31

0.14

0.61

0.91

0.95

1.00