Table 4 Gene sets enriched in phenotype
Gene set name | NES | NOM p-val | FDR q-val |
|---|---|---|---|
High expression | |||
 KEGG_CELL_CYCLE | 2.480884 | 0 | 0 |
 KEGG_P53_SIGNALING_PATHWAY | 2.169725 | 0 | 4.86e−04 |
 KEGG_BASAL_TRANSCRIPTION_FACTORS | 2.162689 | 0 | 8.37e−04 |
 KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS | 2.126961 | 0 | 9.34e−04 |
 KEGG_GLYCOLYSIS_GLUCONEOGENESIS | 2.00116 | 0 | 6.15e−03 |
 KEGG_CITRATE_CYCLE_TCA_CYCLE | 1.926811 | 0.004228 | 1.19e−02 |
 KEGG_OXIDATIVE_PHOSPHORYLATION | 1.815468 | 0.014706 | 2.55e−02 |
 KEGG_PANCREATIC_CANCER | 1.753528 | 0.012346 | 3.90e−02 |
 KEGG_RENAL_CELL_CARCINOMA | 1.732231 | 0.014553 | 4.46e−02 |
 KEGG_BLADDER_CANCER | 1.718563 | 0.011858 | 4.81e−02 |
 GO_CELL_CYCLE_G2_M_PHASE_TRANSITION | 2.451194 | 0 | 4.13e−04 |
 GO_CELLULAR_RESPONSE_TO_OXYGEN_LEVELS | 2.442309 | 0 | 2.06e−04 |
 GO_CHROMOSOME_SEGREGATION | 2.4354 | 0 | 1.65e−04 |
 GO_INTERLEUKIN_1_MEDIATED_SIGNALING_PATHWAY | 2.433667 | 0 | 1.50e−04 |
 GO_MULTI_ORGANISM_LOCALIZATION | 2.421357 | 0 | 2.64e−04 |
 GO_CONDENSED_CHROMOSOME | 2.415586 | 0 | 2.31e−04 |
 GO_UBIQUITIN_LIKE_PROTEIN_CONJUGATING_ENZYME_ACTIVITY | 2.389575 | 0 | 2.11e−04 |
 GO_MICROTUBULE_CYTOSKELETON_ORGANIZATION_INVOLVED_IN_MITOSIS | 2.380871 | 0 | 2.11e−04 |
 GO_SISTER_CHROMATID_SEGREGATION | 2.351018 | 0 | 2.04e−04 |
 GO_MITOTIC_SPINDLE_ORGANIZATION | 2.344327 | 0 | 1.88e−04 |