Types | Markers | TIMER | GEPIA | ||
---|---|---|---|---|---|
R | p-value | R | p-value | ||
Immune cell | CD45 (PTPRC) | 0.050 | 0.510 | 0.037 | 0.620 |
T cell (general) | CD3D | − 0.008 | 0.911 | − 0.026 | 0.730 |
 | CD3E | − 0.002 | 0.982 | − 0.013 | 0.860 |
 | CD3G | 0.027 | 0.721 | − 0.028 | 0.710 |
CD4+ T cell | CD4 | 0.088 | 0.242 | 0.075 | 0.320 |
 | FOXP3 | 0.057 | 0.451 | 0.066 | 0.380 |
CD8+ T cell | CD8A | − 0.001 | 0.986 | − 0.200 | 0.790 |
 | CD8B | 0.019 | 0.799 | 0.009 | 0.910 |
B cell | CD19 | 0.030 | 0.695 | 0.022 | 0.770 |
 | CD79A | − 0.018 | 0.814 | − 0.046 | 0.540 |
Monocyte | CD86 | 0.158 | * | 0.150 | * |
 | CD115 (CSF1R) | 0.043 | 0.568 | 0.053 | 0.480 |
Neutrophil | CD66b (CEACAM8) | 0.182 | * | 0.190 | * |
 | CD11b (ITGAM) | 0.255 | *** | 0.240 | ** |
 | CCR7 | 0.013 | 0.860 | − 0.003 | 0.97 |
TAM | CD68 | 0.288 | *** | 0.290 | *** |
 | CCL2 | − 0.053 | 0.477 | − 0.051 | 0.500 |
M1 Macrophage | iNOS (NOS2) | 0.086 | 0.249 | 0.110 | 0.130 |
 | HLA-DRB1 | 0.067 | 0.375 | 0.089 | 0.230 |
M2 Macrophage | CD163 | 0.088 | 0.243 | 0.110 | 0.140 |
 | CD204 (MSR1) | 0.138 | 0.067 | 0.140 | 0.057 |
 | CD206 (MRC1) | 0.066 | 0.382 | 0.058 | 0.440 |
NK cell | CD56 (NCAM1) | − 0.353 | *** | − 0.230 | ** |
 | KIR2DL1 | − 0.043 | 0.564 | − 0.050 | 0.510 |
 | KIR3DL1 | − 0.106 | 0.158 | − 0.130 | 0.081 |
 | KIR2DS4 | 0.036 | 0.633 | 0.027 | 0.720 |
DC | S100A1 | − 0.148 | * | − 0.160 | * |
 | S100B | − 0.030 | 0.686 | − 0.028 | 0.710 |
EMT-related | Vimentin (VIM) | 0.196 | ** | 0.210 | ** |
 | E-Cadherin (CDH1) | 0.506 | *** | 0.540 | *** |
 | Twist (TWIST1) | 0.313 | *** | 0.320 | *** |
 | Snail (SNAI1) | 0.157 | * | 0.170 | * |
 | N-Cadherin (CDH2) | 0.032 | 0.670 | 0.051 | 0.500 |
CSC-related | CD133 (PROM1) | 0.334 | *** | 0.350 | *** |
 | OCT4 (POU5F1) | 0.407 | *** | 0.420 | *** |
 | KLF4 | 0.377 | *** | 0.400 | *** |
 | NANOG | 0.060 | 0.428 | 0.170 | * |
 | CD24 | 0.149 | * | 0.140 | 0.059 |
 | ALDH1A1 | − 0.044 | 0.560 | − 0.047 | 0.530 |
 | SOX2 | − 0.032 | 0.673 | − 0.021 | 0.780 |