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Table 5 Nearby targeted DEmRNAs of DElncRNAs in tumor tissues from bone metastatic sites compared with lung/liver metastatic sites of breast cancer

From: New insight into long non-coding RNAs associated with bone metastasis of breast cancer based on an integrated analysis

DElncRNA Nearby targeted DEmRNA
chr Symbol Start − 100 kb End + 100 kb Symbol Start End
Bone metastasis vs lung metastasis
 1 LOC642864 108757217 108958524 CLCC1 108929508 108963457
 3 LOC100131551 194196465 194412803 LRRC15 194355247 194369743
 4 LOC641518 108067525 108356836 LEF1 108047545 108168956
 7 LOC100505881 79352877 79571208 MAGI2 78017057 79453574
 9 FLJ35024 2321597 2743359 VLDLR 2621834 2660053
 7 LOC285972 150333654 150548140 RARRES2 150338317 150341674
 12 LOC255480 114308191 114512831 TBX5 114353931 114408442
Bone metastasis vs liver metastasis
 20 PRNT 4631282 4840668 PRND 4721910 4728460
 20 PRNT 4631282 4840668 RASSF2 4780023 4823645
 21 DSCR8 38021451 38256511 KCNJ15 38155549 38307357
 21 DSCR8 38021451 38256511 KCNJ6 37607376 38121345
 6 LOC730101 52564366 52769155 TRAM2 52497402 52576915
 2 LOC401022 176064051 176288958 HOXD9 176122720 176124937
 2 LOC401022 176064051 176288958 HOXD10 176108790 176119942
 12 HOTAIR 53862308 54074956 HOXC13 53938765 53946544
 7 LOC285972 150333654 150548140 RARRES2 150338317 150341674
 5 FLJ38109 154229437 154545850 HAND1 154474972 154478264
 14 LOC283547 38649339 39048273 SEC23A 39031919 39109646
 1 LOC127841 204268431 204469719 PLEKHA6 204218851 204377665
 16 FLJ39639 3163743 3367567 OR1F2P 3215611 3216543
 8 LOC254896 22984355 23203558 TNFRSF10C 23102590 23117437
  1. DEmRNAs differentially expressed mRNAs, DElncRNAs differentially expressed lncRNAs