Table 5 Nearby targeted DEmRNAs of DElncRNAs in tumor tissues from bone metastatic sites compared with lung/liver metastatic sites of breast cancer
DElncRNA | Nearby targeted DEmRNA | |||||
|---|---|---|---|---|---|---|
chr | Symbol | Start − 100 kb | End + 100 kb | Symbol | Start | End |
Bone metastasis vs lung metastasis | ||||||
1 | LOC642864 | 108757217 | 108958524 | CLCC1 | 108929508 | 108963457 |
3 | LOC100131551 | 194196465 | 194412803 | LRRC15 | 194355247 | 194369743 |
4 | LOC641518 | 108067525 | 108356836 | LEF1 | 108047545 | 108168956 |
7 | LOC100505881 | 79352877 | 79571208 | MAGI2 | 78017057 | 79453574 |
9 | FLJ35024 | 2321597 | 2743359 | VLDLR | 2621834 | 2660053 |
7 | LOC285972 | 150333654 | 150548140 | RARRES2 | 150338317 | 150341674 |
12 | LOC255480 | 114308191 | 114512831 | TBX5 | 114353931 | 114408442 |
Bone metastasis vs liver metastasis | ||||||
20 | PRNT | 4631282 | 4840668 | PRND | 4721910 | 4728460 |
20 | PRNT | 4631282 | 4840668 | RASSF2 | 4780023 | 4823645 |
21 | DSCR8 | 38021451 | 38256511 | KCNJ15 | 38155549 | 38307357 |
21 | DSCR8 | 38021451 | 38256511 | KCNJ6 | 37607376 | 38121345 |
6 | LOC730101 | 52564366 | 52769155 | TRAM2 | 52497402 | 52576915 |
2 | LOC401022 | 176064051 | 176288958 | HOXD9 | 176122720 | 176124937 |
2 | LOC401022 | 176064051 | 176288958 | HOXD10 | 176108790 | 176119942 |
12 | HOTAIR | 53862308 | 54074956 | HOXC13 | 53938765 | 53946544 |
7 | LOC285972 | 150333654 | 150548140 | RARRES2 | 150338317 | 150341674 |
5 | FLJ38109 | 154229437 | 154545850 | HAND1 | 154474972 | 154478264 |
14 | LOC283547 | 38649339 | 39048273 | SEC23A | 39031919 | 39109646 |
1 | LOC127841 | 204268431 | 204469719 | PLEKHA6 | 204218851 | 204377665 |
16 | FLJ39639 | 3163743 | 3367567 | OR1F2P | 3215611 | 3216543 |
8 | LOC254896 | 22984355 | 23203558 | TNFRSF10C | 23102590 | 23117437 |