Skip to main content

Table 4 Kinase, miRNA and transcription factor-target networks of LYRM4 in LIHC (LinkedOmics)

From: Iron-sulphur cluster biogenesis factor LYRM4 is a novel prognostic biomarker associated with immune infiltrates in hepatocellular carcinoma

Enriched category Geneset Leading edge number FDR P value
Kinase Target Kinase_MYLK 4 0.11981 0.0045662
  Kinase_MYLK3 4 0.11981 0.0045662
  Kinase_MYLK4 4 0.11981 0.0045662
  Kinase_RPS6KA4 7 0.13792 0.020492
  Kinase_EGFR 26 0.19472 0
miRNA Target GTTTGTT,MIR-495 97 0 0
  GCACCTT,MIR-18A,MIR-18B 44 0 0
  CTATGCA,MIR-153 92 0 0
  AGCACTT,MIR-93,MIR-302A,MIR-302B,MIR-302C,MIR-302D,MIR-372,MIR-373,MIR-520E,MIR-520A,MIR-526B,MIR-520B,MIR-520C,MIR-520D 160 0 0
  ACATTCC,MIR-1,MIR-206 123 0 0
Transcription Factor Target GGAANCGGAANY_UNKNOWN 44 0 0
  SCGGAAGY_V$ELK1_02 300 0 0
  V$ISRE_01 78 0.0011582 0
  V$PAX4_02 67 0.0017373 0
  YNGTTNNNATT_UNKNOWN 108 0.0034745 0
  1. FDR, false discovery rate of gene set enrichment analysis (GSEA) from Benjamini and Hochberg. V$, the annotation found in Molecular Signatures Database (MSigDB) for transcription factors (TF)