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Table 2 Top 20 upregulated and downregulated genes

From: AGAP2-AS1 as a prognostic biomarker in low-risk clear cell renal cell carcinoma patients with progressing disease

Symbol

Ratio NP/P

Abs. FC

P Value

Most overrepresented in Nonprogr

 SLC12A1

14.31

14.31

1.24E−02

 AC146944.1

11.82

11.82

6.37E−03

 IGHA2

9.18

9.18

1.40E−02

 IGLL5

9.13

9.13

8.78E−03

 SLC9A4

8.84

8.84

1.51E−03

 HPD

8.05

8.05

1.68E−02

 IGKV1-5

7.98

7.98

1.44E−03

 GRIA4

6.53

6.53

1.27E−02

 H3F3AP4

6.46

6.46

9.16E−03

 IGHV4-61

6.14

6.14

2.43E−02

 SNORD115-11

5.89

5.89

2.41E−02

 IGLV2-23

5.78

5.78

1.12E−02

 IGLV2-14

5.77

5.77

3.10E−03

 CLEC18C

5.62

5.62

2.11E−02

 SNORA38

5.62

5.62

3.51E−04

 MST1P2

5.60

5.60

4.75E−03

 IGKV1-39

5.55

5.55

1.03E−02

 MST1L

5.54

5.54

2.48E−02

 LTF

5.50

5.50

3.37E−03

 SYT7

5.5

5.50

0.00595

Most overrepresented in Progr

 SV2B

0.06737229

14.8429

0.000319

 FAM86B2

0.077412071

12.91788

0.000404

 NPIPB9

0.082203939

12.16487

2.76E-05

 ANKRD20A7P

0.085199087

11.73721

0.000611

 LBP

0.092082598

10.85982

0.000551

 SNORD116-18

0.097088878

10.29984

0.01859

 ADGRB1

0.10462215

9.558205

0.000124

 ASAH2

0.106344157

9.403432

0.003289

 PLK4

0.108067443

9.253481

0.002456

 STAG3

0.108558859

9.211593

0.000654

 ZNF321P

0.109969942

9.093394

0.000128

 AC135048.4

0.113068345

8.844208

6.67E-05

 NPIPB1P

0.113446458

8.814731

0.001067

 SYS1-DBNDD2

0.118191167

8.460869

0.00063

 RMRP

0.122271935

8.178492

0.023045

 RASA4CP

0.123307134

8.109831

0.008782

 AC239799.1

0.123616908

8.089508

0.011112

 DCUN1D2

0.125942208

7.94015

3.24E-05

 FAM131C

0.128131248

7.804497

0.000418

 CAMK2B

0.132235909

7.562242

0.000196

  1. Top 20 upregulated and downregulated genes in nonprogressor and progressor patients. The 20 genes with the lowest and highest FC are displayed. AGAP-AS1 was not found among these genes
  2. Nonprogr nonprogressors; Progr progressors