Table 3 Correlation between SMARCC1 and immune cells’ gene markers in HCC
From: Prognostic biomarker SMARCC1 and its association with immune infiltrates in hepatocellular carcinoma
Cells subtypes | Markers | Correlation | P-value | adj. P-value |
|---|---|---|---|---|
B cells | CD19 | 0.266 | 0.000 | 0.000 |
CD79A | 0.227 | 0.000 | 0.000 | |
T cells (general) | CD2 | 0.243 | 0.000 | 0.000 |
CD3D | 0.226 | 0.000 | 0.000 | |
CD3E | 0.270 | 0.000 | 0.000 | |
CD8 + T cells | CD8A | 0.244 | 0.000 | 0.000 |
CD8B | 0.176 | 0.001 | 0.010 | |
CD4 + T cells | CD4 | 0.234 | 0.000 | 0.000 |
QRSL1 | 0.569 | 0.000 | 0.000 | |
STAT1 | 0.510 | 0.000 | 0.000 | |
STAT4 | 0.248 | 0.000 | 0.000 | |
STAT5A | 0.442 | 0.000 | 0.000 | |
STAT6 | 0.343 | 0.000 | 0.000 | |
TBX21 | 0.204 | 0.000 | 0.000 | |
Tumor associated macrophages | CCL2 | 0.230 | 0.000 | 0.000 |
CD68 | 0.320 | 0.000 | 0.000 | |
IL10 | 0.380 | 0.000 | 0.000 | |
Type I macrophages | IRF5 | 0.421 | 0.000 | 0.000 |
NOS2 | 0.066 | 0.224 | 0.319 | |
PTGS2 | 0.330 | 0.000 | 0.000 | |
Type II macrophages | CD163 | 0.276 | 0.000 | 0.000 |
MS4A4A | 0.254 | 0.000 | 0.000 | |
VSIG4 | 0.240 | 0.000 | 0.000 | |
Neutrophil | CCR7 | 0.224 | 0.000 | 0.000 |
ITGAM | 0.398 | 0.000 | 0.000 | |
Dendritic cells | CD1C | 0.286 | 0.000 | 0.000 |
HLA-DPB1 | 0.247 | 0.000 | 0.000 | |
HLA-DQB1 | 0.179 | 0.001 | 0.004 | |
HLA-DRA | 0.303 | 0.000 | 0.000 | |
ITGAX | 0.450 | 0.000 | 0.000 | |
NRP1 | 0.531 | 0.000 | 0.000 |