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Table 1 Hub genes ranked in cytoHubba

From: Identification of collagen genes related to immune infiltration and epithelial-mesenchymal transition in glioma

Category

Rank methods in cytoHubba

Degree

EPC

Closeness

Radiality

Genes top 20

FN1

FN1

FN1

FN1

 

CD44

COL4A1

COL4A1

COL4A1

 

COL4A1

ANGPT2

ANXA2

ANXA2

 

ANXA2

COL5A2

CD44

ANGPT2

 

COL5A2

ANXA2

ANGPT2

LAMB1

 

ANGPT2

COL3A1

LAMB1

COL1A1

 

COL3A1

COL1A1

SERPINH1

SERPINH1

 

COL1A1

CALD1

COL5A2

CALD1

 

CLIC1

CD44

COL1A1

CD44

 

CALD1

SERPINH1

CALD1

NAMPT

 

LAMB1

COL1A2

COL1A2

LAMC1

 

SERPINH1

NAMPT

LAMC1

COL5A2

 

COL1A2

LAMB1

NAMPT

COL1A2

 

LAMC1

LAMC1

CLIC1

PDPN

 

NAMPT

CLIC1

COL3A1

COL4A2

 

ADAM12

COL4A2

COL4A2

GALNT2

 

CAV1

ADAM12

PDPN

P4HB

 

COL4A2

CAV1

P4HB

CXCR4

 

CD93

NOX4

ADAM12

CLIC1

 

PDPN

ENPEP

GALNT2

COL3A1

  1. Top 20 genes are determined by six algorithms respectively in cytoHubba. The bold ones represent selected collagen genes; EPC Edge percolated component