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Table 1 Hub genes ranked in cytoHubba

From: Identification of collagen genes related to immune infiltration and epithelial-mesenchymal transition in glioma

Category Rank methods in cytoHubba
Degree EPC Closeness Radiality
Genes top 20 FN1 FN1 FN1 FN1
  CD44 COL4A1 COL4A1 COL4A1
  COL4A1 ANGPT2 ANXA2 ANXA2
  ANXA2 COL5A2 CD44 ANGPT2
  COL5A2 ANXA2 ANGPT2 LAMB1
  ANGPT2 COL3A1 LAMB1 COL1A1
  COL3A1 COL1A1 SERPINH1 SERPINH1
  COL1A1 CALD1 COL5A2 CALD1
  CLIC1 CD44 COL1A1 CD44
  CALD1 SERPINH1 CALD1 NAMPT
  LAMB1 COL1A2 COL1A2 LAMC1
  SERPINH1 NAMPT LAMC1 COL5A2
  COL1A2 LAMB1 NAMPT COL1A2
  LAMC1 LAMC1 CLIC1 PDPN
  NAMPT CLIC1 COL3A1 COL4A2
  ADAM12 COL4A2 COL4A2 GALNT2
  CAV1 ADAM12 PDPN P4HB
  COL4A2 CAV1 P4HB CXCR4
  CD93 NOX4 ADAM12 CLIC1
  PDPN ENPEP GALNT2 COL3A1
  1. Top 20 genes are determined by six algorithms respectively in cytoHubba. The bold ones represent selected collagen genes; EPC Edge percolated component