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Table 1 Characteristics of ecDNA

From: Revisiting characteristics of oncogenic extrachromosomal DNA as mobile enhancers on neuroblastoma and glioma cancers

 

Abbreviation name

Number of strand(s)

Size

Origination

Sequence feature

Cancer association machanism

Refs.

Extrachromosomal small circular DNA

eccDNA

Single or double

< 1 Mb. invisible under microscope

Telomere circle, spcDNA, miDNA, episome

Small regulatory RNA

tumurgenic through selective teleomeric extension, modifying geneome stability

[9, 66, 71, 107]

Extrachromosomal DNA (double minutes)

ecDNA

Double

1–3 Mb, visible under microscope

BFB cycle, translocation/deletion amplification, episome and chromothripsis

Oncogene amplification, regulatory regions, no centromeres or telomeres

Oncogene amplification, chromosome, rearrangement Gene fusions, epigenetic/Histone, modification, nucleosome accessibility, signaling pathways regulation intra-tumoral heterogeneity autophagy, metastasis and invasiveness, senescence antitumor immunity

[1, 9, 25, 108]