Table 6 DE genes in the comparison of different culturing conditions. RNA transcriptome profiles were analysed for DE genes in cells cultured on Matrigel compared to plastic and on Myogel compared to Matrigel. The genes that passed the filter criteria had an adjusted p < 0.05. There were no DE genes comparing the transcriptomes of cells cultured on plastic and Myogel
MATRIGEL VS PLASTIC | ||
|---|---|---|
External gene name | log2FoldChange | padj |
GSTA1 | -20.2495 | 3.93E-05 |
RASD1 | 2.730824 | 0.013363 |
MEGF10 | 2.944972 | 0.023495 |
MYOGEL VS MATRIGEL | ||
External gene name | log2FoldChange | padj |
COX6C | 38.05927 | 7.63E-11 |
OR1Q1 | -33.1441 | 4.00E-08 |
PSMC1P12 | 33.20884 | 4.19E-08 |
GSTA1 | 22,06886 | 5.17E-08 |
STMN4 | 31.407 | 2.19E-07 |
ZSCAN4 | -29.6661 | 3.32E-06 |
LINC01645 | 28.28514 | 1.41E-05 |
CDY1 | 25.64111 | 0.000241 |
ZNF32-AS1 | 25.64111 | 0.000241 |
LINC02671 | -24.7123 | 0.00057 |
ITPKB-AS1 | 24.47725 | 0.00067 |
Y_RNA | 23.43644 | 0.001932 |
CELA1 | -20.1613 | 0.004615 |
NPIPA9 | -20.3217 | 0.034303 |
UBE2FP2 | -20.2297 | 0.039927 |