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Table 1 Aptamer advantage vs. antibodies

From: Aptamers as an approach to targeted cancer therapy

Features

Monoclonal Antibody

Aptamer

Aptamer Advantage

Size

 ~ 150–170 kDa

 ~ 12–30 kDa (~ 30–80 nucleotides)

Aptamers, due to their small size, can penetrate tissues and cells, exhibit superior target access and blood clearance, and have a lower tendency to be toxic and immunogenic

Stability

Susceptible to high temperatures and pH changes

Require refrigeration for storage

The denaturation is irreversible

Fairly stable at ambient temperature

The denaturation is reversible

Aptamers possess remarkable stability and remain effective even after prolonged storage. Moreover, they are capable of being transported at room temperature without any special handling requirements. This makes them a highly convenient and practical option

Target potential

Targets must produce an immune response, minimum target size ≥ 600 Daltons

Can bind to very small targets, minimum target size ≥ 60 Daltons

Aptamers can be selected against a wide range of targets, including small molecules, toxic compounds, and non-immunogenic substances

Development Process

Require immune response and animals through in vivo production and cell culture

Chemical synthesis through SELEX process

SELEX screens large molecular diversity and requires only a few nanomoles for selection, while ensuring batch-to-batch consistency and no contamination

Modification

Typically conjugated with one type of signaling or binding molecule

Can be modified at both the 5’ and 3’ end

Aptamers can be easily modified for attachment and easy addition of functionalities during synthesis

Production time and cost

The production requires long time (~ 4–6 months) and expensive in vivo procedures

The selected aptamers are chemically synthesized (~ 1–3 months), reducing the production cost

Faster development time means faster time to market or publication