Table 1 Sequencing data quality of RNA samples
Group names | Replicates | Raw data | Clean data (%) | Q20 (%)a | Q30 (%)b | GC content (%) |
|---|---|---|---|---|---|---|
MCF7-Control | 1 | 43,008,256 | 42,675,908 (99.23%) | 96.87 | 91.71 | 50.21 |
2 | 42,320,664 | 42,053,794 (99.37%) | 97.46 | 92.94 | 48.99 | |
3 | 46,664,468 | 46,332,242 (99.29%) | 97.41 | 92.90 | 49.69 | |
RH-MCF7 | 1 | 45,433,840 | 45,077,732 (99.22%) | 97.22 | 92.47 | 50.72 |
2 | 43,251,286 | 42,923,576 (99.24%) | 97.44 | 92.94 | 52.38 | |
3 | 42,540,634 | 42,218,686 (99.24%) | 97.30 | 92.66 | 51.47 | |
ME49-MCF7 | 1 | 39,850,378 | 39,541,180 (99.22%) | 97.05 | 92.13 | 51.52 |
2 | 35,919,448 | 35,630,834 (99.20%) | 96.93 | 91.88 | 51.47 | |
3 | 48,489,656 | 48,135,114 (99.27%) | 97.39 | 92.85 | 50.89 | |
MDA-Control | 1 | 48,655,104 | 48,295,604 (99.26%) | 96.89 | 90.91 | 50.26 |
2 | 54,805,114 | 54,435,262 (99.33%) | 97.70 | 93.41 | 50.65 | |
3 | 45,504,072 | 45,194,564 (99.32%) | 96.81 | 91.07 | 50.25 | |
RH-MDA | 1 | 42,000,072 | 41,713,592 (99.32%) | 96.97 | 91.03 | 48.96 |
2 | 43,396,684 | 42,999,618 (99.09%) | 96.50 | 90.50 | 49.50 | |
3 | 48,019,976 | 47,655,084 (99.24%) | 96.47 | 90.14 | 49.21 | |
ME49-MDA | 1 | 57,835,620 | 57,477,664 (99.38%) | 97.24 | 91.73 | 51.04 |
2 | 43,552,936 | 43,212,422 (99.22%) | 97.54 | 93.13 | 52.15 | |
3 | 51,301,478 | 50,900,190 (99.22%) | 96.49 | 90.20 | 51.92 | |
T. gondii RH | 1 | 43,693,644 | 43,372,154 (99.26%) | 97.21 | 92.55 | 53.91 |
2 | 44,141,046 | 43,825,502 (99.29%) | 97.40 | 92.96 | 53.75 | |
3 | 46,802,056 | 46,451,454 (99.25%) | 97.09 | 92.29 | 53.86 | |
T. gondii ME49 | 1 | 42,966,202 | 42,647,498 (99.26%) | 97.24 | 92.60 | 53.60 |
2 | 38,737,176 | 38,441,932 (99.24%) | 97.23 | 92.51 | 51.70 | |
3 | 46,381,542 | 46,050,574 (99.29%) | 97.56 | 93.31 | 53.81 |