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Clinicopathological and prognostic significance of long noncoding RNA MALAT1 in human cancers: a review and meta-analysis
Cancer Cell International volume 18, Article number: 109 (2018)
The aberrant regulation of MALAT1 has been indicated to be involved in various carcinogenic pathways contributing to the tumourigenesis and progression of cancers. The current meta-analysis summarized the research advances of MALAT1 functions and analyzed its prognostic value among multiple types of cancers.
Eligible studies were identified through retrieving the PubMed, Web of Science, and CNKI databases, up to Mar 1, 2018. 28 studies of 5436 patients and 36 studies of 3325 patients were enrolled in the meta-analysis to evaluate the association of MALAT1 expression with survival outcomes and clinical parameters.
The results demonstrated that over-expression of MALAT1 may predict lymph node metastasis (pooled OR = 2.335, 95% CI 1.606–3.395, P = 0.000) and distant metastasis (pooled OR = 2.456, 95% CI 1.407–4.286, P = 0.002). Moreover, MALAT1 was also related with tumour size (pooled OR = 1.875, 95% CI 1.257–2.795, P = 0.002) and TNM stage (pooled OR = 2.034, 95% CI 1.111–3.724, P = 0.021). Additionally, elevated MALAT1 expression could predict poor OS (pooled HR = 2.298, 95% CI 1.953–2.704, P = 0.000), DFS (pooled HR = 2.036, 95% CI 1.240–3.342, P = 0.005), RFS (pooled HR = 2.491, 95% CI 1.505–4.123, P = 0.000), DSS (pooled HR = 2.098, 95% CI 1.372–3.211, P = 0.001) and PFS (pooled HR = 1.842, 95% CI 1.138–2.983, P = 0.013) in multivariate model. Importantly, subgroup analyses disclosed that increased MALAT1 expression had a poor OS among different cancer types (Estrogen-dependent cancer: pooled HR = 2.656, 95% CI 1.560–4.523; urological cancer: pooled HR = 1.952, 95% CI 1.189–3.204; glioma: pooled HR = 2.315, 95% CI 1.643–3.263; digestive cancer: pooled HR = 2.451, 95% CI 1.862–3.227).
The present findings demonstrated that MALAT1 may be a novel biomarker for predicting survival outcome, lymph node metastasis and distant metastasis.
Long non-coding RNAs (lncRNAs) as genomic “dark matters” have been disclosed to be closely related to the development of cancer [1,2,3], which lead to the alteration of oncogenic phenotypes including cell proliferation, differentiation, metastasis, apoptosis and invasion [3,4,5,6]. Based on the current emerging evidence, cancer-related lncRNAs may be candidate biomarkers for affording precise diagnosis, appraisal of personalized prognosis, evaluation of targeted therapy and prediction of lymph node metastasis, distant metastasis as well as tumour differentiation [7,8,9].
The metastasis-associated lung adenocarcinoma transcript 1 (MAlAT1) is mapped to human chromosome 11q13 [10, 11]. Differentiating from other members of lncRNAs family, MALAT1 is a broadly expressed and evolutionarily conserved lncRNA with length of more than 8000 nt. Ji et al. initially discovered that MALAT1, a metastasis-associated gene, may be used to identify early-stage NSCLC patients that are at high risk to develop deterioration with metastasis . Evidence for the carcinogenic roles of MALAT1 has gradually emerged from previous fundamental and clinical studies. For example, MALAT1 silencing might impede proliferation, migration, and invasion of triple-negative breast cancer (TNBC) cell by reversely mediating MiR-129-5p . MALAT1 acts as a competitive endogenous RNA (ceRNA) to regulate ZEB1 expression by sponging miR-143-3p, whereas miR-143-3p inhibitor partially impaired the effect of MALAT1 on hepatocellular carcinoma (HCC) cells, and the inhibition of MALAT1 also might inhabit proliferation and invasion of HCC cells . Moreover, activation of p53 may be due to depletion of MALAT1, which may result in cell cycle defects that are sensitive to p53 levels . MALAT1 expression might be regulated by DNA methylation in lung cancer by evaluating methylation status of the CpG island at the MALAT1 promoter . Furthermore, up-regulated MALAT1 promotes cell metastasis by activating the Wnt/β-catenin signaling pathway to promote EMT of bladder cancer cells [17, 18]. Transition of oncogenic phenotypes caused by MALAT1 have also been observed in cervical cancer , gastric cancer , prostate cancer . Taken together, emerging evidence manifested that dysregulated MATAT1 is closely related to the development of various types of cancer.
For the recent decade, increasing studies have demonstrated the influence of MALAT1 expression on clinicopathological parameters and prognostic outcomes among diffident types of cancer, including digestive cancers [20, 22,23,24,25,26], gliomas [27, 28], estrogen-dependent cancers [29,30,31], urological cancers [32,33,34] and other cancers [12, 35]. However, these published studies have emerged the inconsistent and controversial conclusions [22, 32, 34, 36]. Herein, we conducted a systematic review and meta-analysis to elucidate the relationship of MALAT1 with prognosis or clinical features and generalized its tumorigenicity among different cancers.
Materials and methods
Eligible records were systematically retrieved in three authoritative databases including PubMed, Web of Science, and CNKI databases up to March 1, 2018 to obtain relevant articles regarding prognostic and clinicopathological outcomes of MALAT1 among malignant cancers, with the following keywords including “MALAT1 expression and (outcome or prognosis or prognostic or mortality or survival) and (cancer OR carcinoma OR tumor OR malignancy OR neoplasm OR lymphoma OR leukemia)”. Besides, the references lists of included studies were retrieved to guarantee that all qualified studies contained in the pooling analysis.
Study selection and data extraction
Data extraction of each qualified articles was as follows: first author, year, country, ethnicity, type of cancers, follow-up (months), detection method, sample size, survival outcome and the corresponding HR and 95% CI and other data for clinical parameters. Eligible articles need to meet the following criteria: (a) studies with cancers diagnosed by pathological and histological confirmation; (b) studies with the survival outcomes such as “overall survival, “disease-free survival”, “recurrence-free survival”, “disease-specific survival”, “progression-free survival”, recurrence and mortality, and other clinical parameters such as lymph node metastasis, distant metastasis, differentiation/histological grade, tumor size and TNM stage; (c) original studies detected MALAT1 expression in tissue or plasma; (d) studies did explicitly provide HR and 95% CI. However, ineligible articles were excluded on the basis of the following criteria: (a) studies focused on other lncRNAs, diagnosis, polymorphism, case reports, reviews and meta-analyses; (b) studies did not provide available data; (c) studies only with mechanisms of MALAT1 and other genes; (d) animal studies of MALAT1 and other lncRNAs; (e) duplicated published reports, articles or data.
Two investigators individually assessed the quality of all included studies according to the Newcastle–Ottawa Scale (NOS), and the scale totally comprises subject selection, comparability of study groups as well as ascertainment of survival outcomes. Articles with NOS ≥ 6 scores were regard as high-quality studies.
Cochran’s Q and I2 tests were applied to find the heterogeneity across studies. Hazard ratios (HRs), odds ratios (ORs) and their 95% confidence intervals (95% CIs) were calculated by using a random effect model when I2 > 50% and the corresponding P value < 0.05. Otherwise, a fixed effect model was used to estimate the pooled results. Subgroup analysis were further performed to find the source of heterogeneity. Each single study on the overall effect of the stability of the pooled results was estimated by performing sensitivity analyses. Egger’s test and Begg’s funnel plot were applied to identify publication bias. All calculated results of the meta-analysis were performed by using Stata 11 software. A P value < 0.05 was consistently regarded as statistical significance.
Identification of the included studies
In the study, the detailed selection process of all 48 included articles presented in Fig. 1. A total of 5436 patients from 28 articles covering 54 cohort studies were included to evaluate prognostic value (presented in Additional file 1: Table S1, Additional file 2: Table S2). Of 54 studies with survival outcomes including OS, DFS, RFS, PFS and DSS, 25 studies from 19 articles [20, 22,23,24, 27, 29, 32, 34, 37,38,39,40,41,42,43,44,45,46,47,48] in univariate analysis, 29 studies from 21 articles [14, 23, 27,28,29, 32, 34, 35, 37, 39, 41,42,43,44,45,46,47, 49,50,51,52] in multivariate analysis. Additionally, 3325 patients from 36 articles [13, 17, 20, 23,24,25,26,27, 31,32,33,34, 37, 42,43,44, 46,47,48,49,50, 53,54,55,56,57,58,59,60,61,62,63,64,65,66,67] with clinical parameters including age, gender, lymph node metastasis (LNM), distant metastasis, differentiation, tumor size and TNM stage were enrolled in the study (data shown in Additional file 3: Table S3). The study contains four cancer types including digestive cancers with gastric cancer (GC), gallbladder cancer (GBC), esophageal cancer (EC), pancreatic duct adenocarcinoma (PDAC), esophageal squamous cell carcinoma (ESCC), hepatocellular carcinoma (HCC) and colorectal cancer (CRC); gliomas with glioblastoma, glioma and glioblastoma multiforme (GBM); estrogen-dependent cancers with cervical cancer (CC), epithelial ovarian cancer (EOC) and breast cancer (BC); and urological cancers with urothelial carcinoma (UC), bladder cancer and clear cell renal cell carcinoma (ccRCC). MALAT expression was detected by quantitative real time PCR (qRT-PCR) and in situ hybridization (ISH).
Association of MALAT1 with clinicopathological parameters
As presented in Table 1, the significant association of MALAT1 expression with patients’ age or gender did not existed (age: P = 0.823 and gender: P = 0.080). The increased expression level of MALAT1 was significantly associated with lymph node metastasis (pooled OR = 2.335, 95% CI 1.606–3.395, P = 0.000), tumour size (pooled OR = 1.875, 95% CI 1.257–2.795, P = 0.002), distant metastasis (pooled OR = 2.456, 95% CI 1.407–4.286, P = 0.002) and TNM stage (pooled OR = 2.034, 95% CI 1.111–3.724, P = 0.021). Moreover, subgroup analysis of cancer type presented that patients with MALAT1 over-expression had higher risk of lymph node metastasis and distant metastasis (shown in Fig. 2a, b).
Association of MALAT1 with survival outcomes
A total of 15 eligible studies with 1869 cases focused on evaluating the association between MALAT1 expression and overall survival in univariate model (Table 2). Overall, patients with elevated expression of MALAT1 had a poor OS in univariate (pooled HR = 2.296, 95% CI 1.716–3.072, P = 0.000) analysis with heterogeneity (I2 = 67.6%). Unlike subgroup of univariate analysis, almost all analytical results of multivariate subgroup had no significant heterogeneity (I2 < 50%). 18 studies comprising 1891 patients reported the relationship of MALAT1 expression with OS in multivariate analysis. Overexpression of MALAT1 had a higher risk of poor OS (pooled HR = 2.298, 95% CI 1.953–2.704, P = 0.000, I2 = 17.2%). MALAT1 high expression was also indicated to predict poor OS among different cancer types (Estrogen-dependent cancer: pooled HR = 2.656, 95% CI = 1.560–4.523; Urological cancer: pooled HR = 1.952, 95% CI 1.189–3.204; Glioma: pooled HR = 2.315, 95% CI 1.643–3.263; Digestive cancer: pooled HR = 2.451, 95% CI 1.862–3.227) (data shown in Table 2 and Fig. 3a). Subgroup analysis of sample size presented in Fig. 3b.
Table 3 presented that patients with MALAT1 over-expression had shorter DFS (pooled HR = 2.036, 95% CI 1.240–3.342, P = 0.005), RFS (pooled HR = 2.491, 95% CI 1.505–4.123, P = 0.000), DSS (pooled HR = 2.098, 95% CI 1.372–3.211, P = 0.001) and PFS (pooled HR = 1.842, 95% CI 1.138–2.983, P = 0.013) than those with low MALAT1 expression in a fixed-effect model (shown in Table 3 and Fig. 4).
Publication bias and sensitivity analysis
Egger’s test and Begg’s funnel plot were applied to examine publication bias. Egger’s test revealed absence of publication bias for OS in univariate (T = 1.47, P = 0.164) and multivariate (T = 1.55, P = 0.141) analyses. The symmetrical funnel plot of OS in multivariate model was presented in Fig. 5. The Egger’s tests and funnel plots of DFS, DSS and RFS also showed no publication bias. Furthermore, no significant publication bias was observed in clinicopathological parameters except for LNM (P = 0.041) and differentiation (P = 0.003). The studies of Droop et al.  significantly influenced the pooled results of OS and DFS according to sensitivity analysis, which indicated that the studies might explain the main source of heterogeneity across studies. Reanalyzed sensitivity analysis identified that the results of the study remained stability and robustness after getting rid of the studies of Droop et al.
Carcinogenic mechanisms of MALAT1 among various cancers
To further explore the association of MALAT1 with the development of cancer, we summarized the effects of MALAT1 silencing on the malignant phenotype and its molecular mechanisms presented in Table 4. Additionally, MALAT1 possesses a variety of molecular functions including promotion of EMT , transcriptional dysregulation, pre-mRNA alternative splicing, ceRNA role , epigenetic alteration and transition of cell phenotype via different signaling pathways covering P13k/Akt , Wnt  and ERK/MAPK  pathways. Taken together, MALAT1 might promote carcinogenesis by exerting its molecular function to regulate the expression of related genes and activate the oncogenic signaling pathway [16, 46, 52, 64, 68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83].
MALAT1 also known as NEAT2 (nuclear-enriched abundant transcript 2), is located in human chromosome 11q13. Unlike most of lncRNAs, MALAT1 is particularly abundant, highly conserved and ubiquitously expressed in multiple types of cancer. MALAT1 was originally discovered to predict metastasis and survival of non-small cell lung cancer . Recently, increasing evidence provided that MALAT1 play a pivotal role in promoting proliferation, migration, metastasis and invasion of tumor cell. MALAT1, a multi-functional lncRNA, might involve in alternative splicing of pre-mRNA, transcriptional and post-transcriptional regulation via interacting with the relevant gene in carcinogenic pathways [84, 85]. Firstly, MALAT1, a novel transcript, may recruit a set of members of SR protein (serine/arginie riched protein) family, such as SRSF1, SRSF2, and SRSF3, and act as a “molecular sponge” to regulate SR protein activity, ultimately leading to alternative splicing of pre-mRNA . Secondly, MALAT1 involvement in transcriptional dysregulation was supported by previous evidence, such as colocalization of serine-2 phosphorylated RNA polymerase II in nuclear speckle compartment, the interaction of unmethylated Pc2 with theTUG1, overlapping the histone H3K36me2 peaks and the recruitment of Sp1 on LTBP3 promoter. For example, MALAT1 could interact with unmethylated Pc2 in the nuclear speckles, and regulate the localization of the Pc2, together with theTUG1, whereas methylated Pc2 generally exists in other nuclear bodies . MALAT1 also inclined to cooperate with the 3′ end of the gene body, overlapping the histone H3K36me2 peaks, a biomarker of active transcriptional elongation . Thirdly, the mechanisms of the post-transcriptional regulation of MALAT1 mainly contains alternative splicing, protein activities and ceRNAs. For example, MALAT1, as a ceRNA, could reciprocally interacts with microRNAs (miR-205, miR-1297, miR-217 and miR-155), ultimately contributing to cell phenotypic changes such as invasiveness, metastasis, proliferation, migration and apoptosis [52, 72, 77]. Besides, MALAT1 might influence carcinogenesis of cancers by activating Wnt/β-catenin, ERK/MAPK and PI3K/AKT pathways, which simultaneous activation of the oncogenic pathways might bring out highly carcinogenic effects . For example, knockdown of MALAT1 could induce the EMT by regulating transcriptional factor snail and activating the PI3K/AKT and Wnt pathways [31, 33, 80]. Furthermore, upregulated MALAT1 could promote EMT-mediated cell migration and metastasis of various malignant cancers since its inhibition impairs the effect of TGF-β-induced EMT by suppressor of zeste 12 (suz12) . Hence, emerging studies have implied that MALAT1 could serve as a potential prognostic biomarker for cancer patients on the basis of the complicated mechanisms of MALAT1 among multiple types of cancer.
Previous published articles reported that lncRNAs including MALAT1 are effective predictors of survival outcomes [89, 90]. However, MALAT1 on the influence of prognostic outcome is still controversial. Therefore, we combined the published studies to evaluate the prognostic and clinical value of MALAT1 among different types of cancer. The meta-analysis is firstly to investigate the relationship between MALAT1 expression and prognosis of glioma as well as estrogen-dependent cancer by pooling eligible studies in multivariate model, which is different from previous meta-analyses. The pooled results of multivariate model may be closer to revealing the authentic relationship of MALAT1 expression with different types of cancers since the adjusted confounding factors involved in several clinical variables as confounders including LNM, differentiation, distant metastasis and other factors. This study also firstly analyzed the association of MALAT1 with tumour differentiation, distant metastasis, TNM stage and tumour size.
The results of the study identified that patients with high expression of MALAT1 have a poor OS in univariate and multivariate models. Moreover, over-expression of MALAT1 may be an unfavorable biomarker of DFS, RFS, DSS and PFS. The results also indicated that the adverse prognostic effect of MALAT1 over-expression was obtained in different types of cancer (estrogen-dependent cancer: pooled HR = 2.656; urological cancer: pooled HR = 1.952; glioma: pooled HR = 2.315; digestive cancer: pooled HR = 2.451). The results of the study are consistent with most of the original studies, which suggest that MALAT1 may be associated with poor prognosis in malignant cancers [61,62,63]. However, the sensitivity analysis identified the studies of Droop et al. , which influenced the stability of the pooled results. The possible reasons were as follows. First, the heterogeneity across studies may be attributed to the difference of genetic background since the subjects of the study were from Germany. Second, Droop et al.’ the study involved two types of bladder cancer, including non-muscle-invasive tumours (NMIBC) and muscle-invasive bladder cancer (MIBC). NMIBC is essentially different from MIBC in tumor biology. Finally, the study is a small sample study. These potential confounders might account for the heterogeneity across studies. In addition, we need to explain that publication bias of LNM and differentiation may be due to small sample studies, which are susceptible to publication bias. Therefore, based on the above evidence, the abnormal regulation and prognostic utility of MALAT1 across multiple types of tumors suggests that MALAT may be a candidate biomarker for applying to therapeutic targets for clinical practice.
There are several limitations in the study. First, the cut-off values of high and low MALAT1 expression were different across studies. Second, the heterogeneity among studies may be due to different qRT-PCR primer sets. Third, significant heterogeneity may also be caused by confounding factors, such as cancer type, ethnicity, and other confounders. Fourth, several original studies did not provide complete data. Finally, the study might present “small-study effects” [91, 92]. For example, the last meta-analysis of HOXA11-AS demonstrated that small sample size studies with lacking of statistical power could obtain higher effect size compared with large sample studies . Therefore, larger-scale studies are authorized to verify these results of the study.
In conclusion, the study revealed that over-expression MALAT1 might be an adverse biomarker for prognostic outcome, lymph node metastasis, distant metastasis, tumour size and TNM stage for cancer patients. MALAT1 might play a pivotal role in the tumorigenesis of multiple types of cancers. However, more high-quality larger-scale studies across ethnicities are warranted to explore the prognostic value and carcinogenic function of MALAT1 before it is applied to the treatment and management of cancer.
long noncoding RNAs
the metastasis-associated lung adenocarcinoma transcript 1
quantitative real-time polymerase chain reaction
in situ hybridization
pancreatic duct adenocarcinoma
esophageal squamous cell carcinoma
epithelial ovarian cancer
clear cell renal cell carcinoma
lymph node metastasis
competitive endogenous RNA
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JL, ZHY and HL conceived and wrote the paper; JL, XTL and MG collected and analyzed the data; JL, ZGC, HL, MG, ZTY and YHB revised the whole paper. All authors have reviewed the final version of the manuscript and approved to submit to your journal. All authors read and approved the final manuscript.
The authors declare that they have no competing interests.
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This study was supported by National Natural Science Foundation of China (No. 81673261).
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